SNP Profiles of PA 121 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	GG	GG	CT	TT	AC	TT	TT	CC	AA	GG	CC	AG	TT
1._GC-05-011-1-11	CT	GG	GG	CT	TT	AC	TT	TT	CC	AA	GG	CC	AG	TT
2._GC-05-011-1-11	CT	GG	GG	CT	TT	AC	TT	TT	CC	AA	GG	CC	AG	TT
3._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	AA	GG	CC	AG	TT
4._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	AA	GG	CC	AG	TT
5._RUQ_1059	CT	GG	GG	CT	TT	AC	TT	TT	CC	AA	GG	CC	AG	TT
6._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	AA	GG	CC	AG	TT
7._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	AA	GG	CC	AG	TT
8._GC-05-011-1-11	CT	GG	GG	CT	TT	AC	TT	TT	CC	AA	GG	CC	AG	TT
9._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	AA	GG	CC	AG	TT
10._RUQ_1059	_	GG	GG	CT	_	_	_	TT	_	_	_	CC	AG	_
11._RUQ_1059	_	_	GG	_	_	_	_	TT	_	_	GG	_	AG	_
12._RUQ_1059	_	_	CC	_	_	_	_	_	_	_	_	CC	_	TT
13._GC-05-011-1-11	CT	AG	CG	CT	CT	AA	CT	TT	CC	AT	AG	CC	AG	TT
14._PA_121_[PER]	CT	AG	CG	CT	CT	AA	CT	TT	CC	AT	AG	CC	AG	TT
15._GC-05-011-1-11	CC	GG	CG	CT	TT	_	CC	GT	TT	TT	AG	CC	AG	CT
16._PA_121_[PER]	CC	GG	CG	CT	TT	_	CC	GT	TT	TT	AG	CC	AG	CT
17._RUQ_1059	AG	GG	CC	AG	AA	AC	AA	AA	_	AA	GG	GG	AG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
1._GC-05-011-1-11	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
2._GC-05-011-1-11	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
3._PA_121_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
4._PA_121_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
5._RUQ_1059	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
6._PA_121_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
7._PA_121_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
8._GC-05-011-1-11	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
9._PA_121_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
10._RUQ_1059	_	_	_	CC	GG	GG	_	TT	CC	CG	GG	CT	AA	AG
11._RUQ_1059	_	_	_	_	GG	GG	AA	_	CC	CG	_	_	AA	_
12._RUQ_1059	_	_	_	CC	CC	_	_	_	CC	CG	_	_	_	_
13._GC-05-011-1-11	AA	GG	CT	CC	GG	GG	AA	TT	CC	CC	GT	TT	CC	AG
14._PA_121_[PER]	AA	GG	CT	CC	GG	GG	AA	TT	CC	CC	GT	TT	CC	AG
15._GC-05-011-1-11	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
16._PA_121_[PER]	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
17._RUQ_1059	AA	CG	AA	GG	CC	CC	_	AA	CC	CG	CC	_	AA	_

	29	30	31	32	33	34	35	36	37	38
_Input profile	GG	AA	CC	AA	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X	X_X
1._GC-05-011-1-11	GG	AA	CC	AA	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X	X_X
2._GC-05-011-1-11	GG	AA	CC	AA	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X	X_X
3._PA_121_[PER]	GG	AA	CC	AA	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X	X_X
4._PA_121_[PER]	GG	AA	CC	AA	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X	X_X
5._RUQ_1059	GG	AA	CC	AA	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X	X_X
6._PA_121_[PER]	GG	AA	CC	AA	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X	X_X
7._PA_121_[PER]	GG	AA	CC	AA	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X	X_X
8._GC-05-011-1-11	GG	AA	CC	AA	AA	_	GT	AC	AT	GG	X_X	X_X	X_X	X_X
9._PA_121_[PER]	GG	AA	CC	AA	AA	_	GT	AC	AT	GG	X_X	X_X	X_X	X_X
10._RUQ_1059	_	AA	CC	AA	AA	CC	GT	AC	_	_	X_X	X_X	X_X	X_X
11._RUQ_1059	_	_	_	AA	_	_	_	AC	_	_	X_X	X_X	X_X	X_X
12._RUQ_1059	_	AA	_	AA	AA	CC	_	AC	_	_	X_X	X_X	X_X	X_X
13._GC-05-011-1-11	AG	AA	CC	AA	AA	TT	TT	CC	TT	CG	X_X	X_X	X_X	X_X
14._PA_121_[PER]	AG	AA	CC	AA	AA	TT	TT	CC	TT	CG	X_X	X_X	X_X	X_X
15._GC-05-011-1-11	AG	TT	CC	AA	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
16._PA_121_[PER]	AG	TT	CC	AA	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X	X_X
17._RUQ_1059	GG	AA	GG	AA	AA	GG	AC	AC	AT	GG	X_X	X_X	X_X	X_X

Input profile: PA_121_[PER]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D393

Dapeng Zhang, 2016

1._PA_121_[PER] GC-05-011-1-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

2._PA_121_[PER] GC-05-011-1-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

3._PA_121_[PER]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 3

Dapeng Zhang, 2016

4._PA_121_[PER]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 1 > FP

Dapeng Zhang, 2016

5._PA_121_[PER] RUQ_1059

identical
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

6._PA_121_[PER]

identical
38 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P60 102

Dapeng Zhang, 2016

7._PA_121_[PER]

identical
38 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0233

Dapeng Zhang, 2016

8._PA_121_[PER] GC-05-011-1-11

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

9._PA_121_[PER]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 5 > FP

Dapeng Zhang, 2016

10._PA_121_[PER] RUQ_1059

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._PA_121_[PER] RUQ_1059

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

12._PA_121_[PER] RUQ_1059

83.3 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

13._PA_121_[PER] GC-05-011-1-11

72.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._PA_121_[PER]

72.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

15._PA_121_[PER] GC-05-011-1-11

60.8 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

16._PA_121_[PER]

60.8 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

17._PA_121_[PER] RUQ_1059

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25